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What Is Chlamydia?

Chlamydia is a common sexually transmitted infection (STI) caused by the bacteria Chlamydia trachomatis. Often labeled a “silent” infection, it frequently presents no noticeable symptoms, allowing it to be unknowingly transmitted. While it primarily affects the genital area, chlamydia can also infect the rectum or throat, depending on the method of exposure.

The Silent Infection

The term “silent” infection refers to the fact that most people with chlamydia infection do not experience symptoms. Chlamydia was at first thought to be caused by a virus, then later discovered to be a bacteria. Because symptoms often are very subtle or hardly noticeable, the risk of not treating the bacterial infection increases, potentially leading to severe consequences such as infertility.

  • In 2015, approximately 61 million people worldwide were affected by chlamydia, with a higher prevalence in women (3.8%) compared to men (2.5%) (CDC).
  • The prevalence of Chlamydia trachomatis in population-based studies ranges from 0.1% to 12.1% in men and from 1.1% to 10.6% in women depending upon age and country. (Dielissen et al., 2013).
  • The bacteria’s slow replication cycle may delay symptom onset, with some individuals experiencing symptoms weeks after exposure (Lee et al., 2018).

Most Frequently Reported STI in the United States

  • Chlamydia is the most reported bacterial STI in the United States, according to the CDC (CDC 2020).
  • Approximately two-thirds of new infections occur in the 15–24 year age-group.
  • A study has found 1 in 20 sexually active women aged 14–24 years has chlamydia (Tjahyadi 2022).

How Chlamydia Spreads

Chlamydia is transmitted through unprotected vaginal, anal, or oral sex with an infected partner. Additionally, pregnant women can pass the infection to their babies during childbirth, which may result in severe complications, such as eye infections or pneumonia in newborns.

Certain groups are at higher risk, including:

  • People under 25 years old.
  • Individuals with multiple sexual partners.
  • Those who do not consistently use condoms.

The Life-Cycle Of Chlamydia Trachomatis

The life cycle of Chlamydia trachomatis is quite unique in that it occurs in two distinct stages within human cells. It begins with the infectious form called the elementary body (EB), which is small, hardy, and capable of surviving outside host cells. (the small orange ball in the top blue image)

Once the EB attaches to and enters a host cell, it transforms into the reticulate body (RB), a larger and metabolically active form. The RB replicates within a protective structure (called an inclusion), using the host cell’s resources to multiply.

After several rounds of replication, the RBs re-organise back into EBs, which are then released from the host cell to infect new cells. This cycle, which takes about 48–72 hours, allows chlamydia to evade the immune system and persist in the body.

The bacteria’s ability to remain undetected during its intra-cellular phase contributes to its virtually symptom-free nature, making routine screening essential for early detection.

Chlamydia Symptoms

Understanding Chlamydia Symptoms in Men and Women

Chlamydia can be a difficult sexually-transmitted disease to diagnose. It is estimated that up to 70% of infected women and 50% of infected men may not experience, or experience very little symptoms at the time of diagnosis.

This lack of symptoms can lead to delayed treatment and potentially serious health complications. Below is an organised overview of chlamydia’s symptoms and risks in both women and men, along with important screening recommendations.

Chlamydia Symptoms Women

Chlamydial infections in women most commonly affect the cervix (the neck of the womb).

The infection is often asymptomatic (no symptoms) but can have severe consequences if left untreated. It has been estimated that around 70% of women with chlamydia show no symptoms, making routine screening essential.

Image: Inflammation of the cervix from chlamydia infection, characterised by cervical discharge, inflammation, and redness.

Women’s Chlamydia Symptoms

  • Abnormal vaginal bleeding
  • Abnormal vaginal discharge
  • Abdominal pain
  • Pelvic pain
  • Painful sexual intercourse
  • Fever
  • Painful urination or urinary urgency

Complications of Pelvic Inflammatory Disease

Around 70 – 80% of men and women with genital chlamydia have no symptoms. However, if untreated, about 17% of infections in women can lead to pelvic inflammatory disease (PID). PID is an infection of the upper female reproductive system that can range from mild to severe. It increases the chances of infertility and ectopic pregnancy (AJGP 2021).

  • Chronic low-grade pelvic pain.
  • Scarring of the reproductive organs such as fallopian tubes, leading to infertility.
  • Increased risk of ectopic (tubal) pregnancies and dangerous pregnancy complications.

Screening Recommendations for Women:

  • Routine Screening:
  • Sexually active women under 25 and those at higher risk (e.g., with multiple sexual partners or inconsistent condom use) should be tested annually (Workowski et al., 2021), (Thompson et al., 2021).
  • Emergency Contraceptive Visits:
  • Women seeking emergency contraception should be offered chlamydia testing, studies indicate up to 9% of women under 25 may be infected (Yeung et al., 2015).

Chlamydia Symptoms Male

In men, chlamydial infections primarily affect the urethra and, in some cases, other parts of the reproductive system. While 50% of infected men do not show symptoms, untreated infections can lead to serious complications.

Men’s Chlamydia Symptoms

Chlamydia in men often goes unnoticed because about half of infected individuals show no symptoms. However, when symptoms do occur, they typically involve the urinary or reproductive system and can lead to complications if left untreated. One of the most common signs is a painful or mild burning sensation during urination, which can indicate inflammation of the urethra.

Men may also experience unusual discharge from the penis, which can vary in colour and consistency. Testicular pain or swelling is another key symptom, often signalling the spread of the infection to the epididymis, a coiled tube near the testicles. In some cases, men may develop a low-grade fever as the body reacts to the infection.

Less commonly, symptoms can include pain or discomfort in the lower abdomen, rectal pain or discharge (if exposed through anal sex), or a sore throat after oral exposure. These symptoms, if ignored, can result in complications like epididymitis, which can lead to infertility, or even reactive arthritis, a rare inflammatory condition affecting the joints.

Expanded Symptom List for Men:

  • Painful or burning sensation during urination: A sign of an inflamed urethra caused by the infection.
  • Unusual discharge from the penis: This can range from clear to milky or yellowish discharge.
  • Testicular pain or swelling: Indicates possible spread of the infection to the epididymis.
  • Fever: A general sign that the body is fighting off an infection.
  • Lower abdominal pain: Though less common, it may occur in some cases.
  • Rectal pain or discharge: May happen following anal exposure.
  • Sore throat: Can occur after oral exposure to the bacteria.

Complications in Men:

  • Epididymitis: Untreated chlamydia can spread to the testicles, causing painful inflammation and, in rare cases, sterility.
  • Prostatitis: Chlamydia is a potential cause of prostatic inflammation, though its exact role in prostatitis remains unclear due to possible contamination from urethritis.

Screening Recommendations for Men:

  • Routine Screening:
  • Routine STI screening and early treatment with antibiotics for men can effectively clear the infection and prevent long-term complications.
  • Sexually active men under 25 and those at higher risk (e.g., with multiple sexual partners or inconsistent condom use) should be tested annually (Workowski et al., 2021), (Thompson et al., 2021).

The Consequences of Untreated Chlamydia

Chlamydia’s “non-symptom” nature makes it a particularly dangerous STI, as infections can persist undetected and cause significant health complications long-term. Regular screening and prompt treatment with antibiotics are essential to prevent long-term consequences in both men and women.

Women with chlamydia are up to five times more likely to contract HIV if exposed (CDC).

One study has confirmed that untreated chlamydia infection posed a significant threat to reproductive health. The findings show that screening is beneficial to the individual, but a focus on treating infections at the time they are acquired may have greater benefit. (Price et al., 2016).

Based on the available evidence, approximately 20% of women with chlamydial lower genital tract infection will develop PID (pelvic inflammatory disease), approximately 4% develop chronic pelvic pain, 3% infertility, and 2% may experience adverse pregnancy outcome (Paavonen et al., 1999).

Others may develop ectopic pregnancy or tubal factor infertility. (these estimates are based on relatively weak evidence however) (Paavonen et al., 1999).

The study mentions that women with continual low-grade lower abdominal pain need better advice on when to seek early medical attention to avoid risk of reproductive damage. If left untreated, chlamydia can result in severe health problems.

Despite the risks, chlamydia is highly treatable with antibiotics. Early detection and treatment are critical to avoid long-term consequences.

Key Takeaway

  • Chlamydia is highly prevalent, especially among individuals aged 15–24 years.
  • It is often asymptomatic, earning it the nickname “silent infection.”
  • Untreated chlamydia can lead to serious complications, including infertility and chronic pelvic pain.
  • It is preventable and treatable with the correct use of condoms and early antibiotic intervention.
  • Routine screening is vital, especially for high-risk groups.
  • Pregnant individuals should be screened to prevent transmission to newborns.

Chlamydia can cause eye infections, most notably trachoma, a chronic form of conjunctivitis caused by Chlamydia trachomatis. Trachoma was once the leading cause of blindness worldwide, but its impact has significantly declined, dropping from 15% of blindness cases in 1995 to 3.6% by 2002 (Burton et al., 2009).

This infection is highly contagious and can spread through direct contact with infected eyes, hands, shared towels or cloths, respiratory droplets, and even eye-seeking flies. Symptoms of trachoma include mucopurulent (pus-like) ocular discharge, eye irritation, redness, and swelling of the eyelids (Dattani et al., 2024)

In newborns, chlamydia eye infections can occur during childbirth if the mother has an untreated infection, causing neonatal conjunctivitis. Without treatment, repeated or severe infections may lead to scarring of the eyelid, inward turning of eyelashes (trichiasis), and eventual blindness.

Symptoms of Trachoma

  • Eye irritation and redness: A persistent feeling of discomfort or itchiness in the eyes.
  • Muco-purulent discharge: Pus-like discharge from the eyes, often causing them to stick together, especially in the morning.
  • Swelling of the eyelids: Inflammation and puffiness around the eyes.
  • Sensitivity to light: Increased discomfort or pain when exposed to bright light.
  • Blurry vision: Difficulty seeing clearly due to the infection’s impact on the eye surface.
  • Scarring of the eyelids (in advanced stages): Repeated infections can lead to scarring that pulls the eyelids inward, causing the eyelashes to rub against the eye (trichiasis).
  • Blindness (in severe or untreated cases): Prolonged damage to the cornea can result in vision loss.

Early treatment is essential to prevent progression to more severe stages of trachoma.

The SAFE Strategy

The SAFE strategy—Surgery for in-turned lashes, Antibiotics, Facial cleanliness, and Environmental improvements—was introduced by the World Health Organization (WHO) to combat trachoma.

Although the WHO aimed for global elimination by 2020 under the “GET 2020” initiative, this goal has been extended to 2030 under the updated roadmap for neglected tropical diseases (Tian et al,., 2018).

Continued efforts in hygiene, education, and access to antibiotics remain critical in eradicating trachoma worldwide.

Chlamydia can trigger reactive arthritis, a condition characterised by the inflammation of joints, conjunctivitis (eye inflammation), and urethritis (inflammation of the urethra). This condition, sometimes referred to as Reiter’s syndrome, is more common in young men but can occur in both sexes. Reactive arthritis typically develops a few weeks after the initial chlamydia infection, particularly if left untreated.

Although Chlamydia trachomatis is a major cause of sexually transmitted infections and plays a key role in reactive arthritis, we still know very little about how the bacteria manage to stay in the body and affect the joints. Our understanding of its survival mechanisms has not improved much in recent years (Rihl et al., 2006).

In the United States, approximately 15,000 men are diagnosed with reactive arthritis caused by chlamydia each year, with around 5,000 experiencing long-term or permanent joint issues.

Symptoms often include joint pain and swelling, particularly in the knees, ankles, and feet. Some may also develop lower back pain due to spinal inflammation. Ankylosing spondylitis has been described in up to 23% of patients with SARA (sexually-acquired reactive arthritis), although it is unclear if this is a complication of SARA or a coexisting disease in a genetically predisposed population (Carlin et al., 2016).

Prompt treatment of the underlying chlamydia infection with antibiotics can reduce the risk of developing reactive arthritis. For those who do develop it, anti-inflammatory medications and physical therapy are often recommended to manage symptoms and improve joint function.

Symptoms of Reactive Arthritis

  • Joint pain and swelling: Commonly affects the knees, ankles, and feet, leading to stiffness and discomfort.
  • Lower back pain: Can occur due to inflammation of the spine or sacroiliac joints.
  • Conjunctivitis (eye inflammation): Redness, irritation, and discharge in the eyes may accompany joint symptoms.
  • Urethritis (inflammation of the urethra): Painful urination or an increased urge to urinate.
  • Swollen fingers or toes: In some cases, digits may appear swollen or sausage-like (dactylitis).
  • Skin rashes or lesions: Rarely, individuals may develop skin issues, such as rashes on the palms, soles, or other areas.

Early detection and treatment of the initial chlamydia infection can reduce the risk of reactive arthritis. For those affected, anti-inflammatory medications and supportive therapies are key to symptom management.

A woman holding a young child kisses the child's forehead in a room with a doctor seated at a desk in the background, discussing the best diaper rash cream.

Infants and Chlamydia

Chlamydia can have serious effects on infants born to mothers with the infection, as up to 50% of these infants may contract the disease. The infection can cause significant complications, including:

  • Spontaneous abortion: Increased risk of miscarriage during pregnancy.
  • Premature birth: Chlamydia can lead to early labor and delivery.
  • Conjunctivitis: Eye infections that typically appear one week after birth and, if untreated, can progress to blindness.
  • Pneumonia: Respiratory infections that can severely impact an infant’s health.

It’s important to note that conjunctivitis from chlamydia differs from other causes of neonatal eye infections, such as chemical irritation (occurring within hours) or gonorrhea (which appears within 2–5 days). Early testing and treatment of pregnant women can help reduce the risk of these complications (Makker et al., 2023).

Other Conditions Caused by Chlamydia

A different strain, or serovar, of Chlamydia trachomatis causes lymphogranuloma venereum (LGV), a sexually transmitted infection that primarily affects the lymph nodes and lymphatic system.

LGV often presents with:

  • Genital ulceration: Painful sores in the genital area.
  • Swollen lymph nodes: Commonly in the groin, but may also occur in other parts of the body.
  • Rectal inflammation: Particularly in cases of anal exposure, leading to pain, discharge, or bleeding.
  • Fever: A general symptom of infection.

Prompt medical attention and antibiotic treatment are crucial for managing these conditions and preventing complications.


Chlamydia Diagnosis

A scientist in a white lab coat and blue gloves is looking through a microscope in a laboratory setting. Various lab equipment is visible on the table.

When visiting a healthcare provider about potential chlamydia infection, they will typically ask about your symptoms or your concerns.

If symptoms are present, they may perform a physical examination to check for discharge, sores, redness, or other signs of infection. If no symptoms are present, the provider will rely primarily on diagnostic testing to confirm or rule out chlamydia infection.

Diagnosing Chlamydia trachomatis infections has significantly advanced since the 1990s, particularly with the development of nucleic acid amplification tests (NAATs). These tests, including polymerase chain reaction (PCR), are now the standard diagnostic tools for detecting chlamydia.

NAATs have largely replaced older diagnostic methods like culture tests, historically the gold standard but now used mainly for non-genital specimens. Non-amplified probe tests were once popular, but detect only 60–80% of infections in asymptomatic women and are prone to false positives.

Other diagnostic techniques include ligase chain reaction (LCR), direct fluorescent antibody testing, enzyme immunoassay, and cell culture, though these are less commonly used.

Key Steps in Chlamydia Diagnosis

  • Testing Methods:
  • The most effective diagnostic test is a vaginal swab for women and a urine sample for men.
  • If there is a risk of infection in other areas, such as the anus or throat, swabs may be taken from these locations as well.
  • Next Steps:
  • If the test is positive, the healthcare provider will arrange a follow-up appointment to discuss treatment options. Prompt treatment is crucial to prevent complications and transmission.

Chlamydia testing can be conducted in clinics, hospitals, or even at home using self-testing kits, making it more accessible for sexually active individuals. With advancements in diagnostic tools like NAATs, early detection is more reliable and effective than ever.

Key Points About Diagnosis:

  • Sample Collection:
  • NAATs can be performed on various samples, including:
  • Cervical or urethral swabs (clinic-collected).
  • Self-collected vaginal swabs.
  • Voided urine samples.
  • Rectal specimens may also yield reliable results, although regulatory approval is pending.
  • Accuracy of NAATs:
  • Sensitivity: Approximately 90% (ability to correctly identify infections).
  • Specificity: Approximately 99% (ability to correctly rule out non-infections).
  • Even with a negative urine NAAT, cervical swabs may detect an additional 2% of infections in women in STI clinics.
  • Home vs. Clinic Collection:
  • Self-collected swabs taken at home are as effective as clinic-collected samples for diagnosing chlamydia, but their impact on treatment outcomes, reinfection rates, partner management, and safety is still unclear (Graseck et al., 2011).
  • Rapid Point-of-Care Tests:
  • These tests are not currently reliable for diagnosing chlamydia in men of reproductive age or non-pregnant women due to high false-negative rates.

Easy ScreeningThanks to the ease, accuracy, and reliability of NAATs, widespread screening is now more accessible, particularly for sexually active men and women. Early and accurate diagnosis is key to preventing complications and reducing the spread of chlamydia.

Challenges in Diagnosis

Diagnosing chlamydia can be difficult because it often shows no symptoms.

  • Diagnosis is typically made by analyzing samples collected from the cervix (in women) or the urethra (in men).
  • Infections may go unnoticed until complications like pelvic inflammatory disease arise.

This asymptomatic nature underscores the importance of routine STI screenings, particularly for sexually active young people.


Chlamydia Treatment

Chlamydia Medication

Chlamydia is a bacterial infection that is both easy to treat and curable with antibiotics. Proper treatment not only clears the infection but also helps prevent complications and transmission to others.

  • Azithromycin: Often prescribed as a single, large dose for convenience and effectiveness.
  • Doxycycline: Taken twice daily for seven days, this is especially effective in men and for rectal infections.
  • Other Options: Alternatives such as erythromycin, levofloxacin, or ofloxacin may be prescribed depending on individual needs or antibiotic resistance.
  • During Pregnancy: Safer options include erythromycin or amoxicillin, which are recommended for pregnant individuals.

Key Considerations During Treatment

  • Follow Dosage Instructions: It is crucial to take the medication exactly as prescribed to ensure the infection clears completely. While single-dose treatments are effective, full recovery may take up to two weeks.
  • Avoid Sexual Activity: Patients should abstain from sex during chlamydia treatment and until a healthcare provider confirms the infection is fully resolved. Reinfection is possible if exposed again, even after completing treatment.

Treating Partners

  • Patient-Delivered Partner Therapy (PDPT): This approach allows patients to provide their partners with antibiotics without requiring them to visit a healthcare provider, reducing the risk of reinfection and further spread (Coombe et al., 2022).

Follow-Up Testing

  • A follow-up test is recommended three months after treatment to check for reinfection.
  • Note: NAAT tests may occasionally yield false-positive results after treatment due to lingering genetic material from the bacteria, even if the infection is no longer active (Miller et al., 2018).

Prompt treatment, responsible sexual practices, and partner notification are essential in managing chlamydia and preventing its spread.

The Yeast Infection Treatment Program

Many species of bacteria and yeast like Candida albicans are becoming increasingly resistant to pharmaceutical drugs. Fungal and bacterial-related health problems have become a hidden epidemic and are increasing. Women are increasingly looking for more drug-free and natural ways of overcoming their personal health challenges. With the latest research into natural medicines and fungal/bacterial overgrowth in our new yeast infection treatment program, we can offer many supportive solutions. The Yeast Infection Treatment Program.

Created by a naturopath with more than 30 years of specialist clinical and research experience in the field of Candida yeast infections, SIBO, and other gut-related health problems such as IBD and IBS.

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Eric Bakker N.D.

Greetings! I am a naturopathic physician from New Zealand. Although I’ve retired from clinical practice since 2019, I remain passionate about helping people improve their lives. You’ll find I’m active online with a focus on natural health and wellbeing education through my Facebook page and YouTube channel, including this website.

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