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Taking Yeastrix Supplements


Let’s talk about how to take the best Candida cleanse supplements. To prevent fungal and bacterial resistance and maximise antimicrobial effectiveness, we recommend using the 3-Phase Anti-fungal Dosing Method. This structured approach gradually adjusts your intake of antifungal supplements based on your personal tolerance level.
You begin with a low dose, increase to a therapeutic dose, and then taper to a maintenance dose. This method supports a strong yet balanced strategy for tackling Candida overgrowth, while reducing the risk of unwanted side effects.

It’s one of the best ways to figure out how to take Candida cleanse supplements and what your body can handle. In fact, this method has helped many people succeed with our formulations — such as Yeastrix — especially when other natural treatments had failed.

Key Factors That Influence Dosing:

  • Treatment Duration – How long your Candida cleanse will run and how many cycles you complete.
  • Tolerance – Your gut sensitivity, dosage limits, and how chronic your condition is.
  • Lifestyle & Diet – Other supplements, medications, and daily habits that affect the outcome.

What Is the Yeastrix 3-Phase Antifungal Dosing Method?

This dosing method is designed to manage Candida overgrowth and support a wide range of fungal, bacterial, and gut-related conditions. It’s a system based on real clinical experience — a framework that works with your body instead of against it.

Developed by NZ naturopath Eric Bakker, this dosing method is grounded in both traditional principles and modern gut health research. It considers your individual healing journey, so dosages may be adjusted as your digestive system and gut microbiome improve.

Simply put:


To get the most out of the best Candida cleanse supplements, it’s important to follow a smart, gentle approach. Start with a low dose, increase gradually, cycle your supplements, and take breaks to reassess how your body’s responding. Adding digestive enzymes and targeted probiotics can make a big difference—helping to break down stubborn biofilms, improve nutrient absorption, ease die-off symptoms, and support a more balanced gut microbiome. This combination not only boosts the effectiveness of your cleanse but also makes the process easier on your body and more sustainable over time.

That’s exactly what this protocol helps you do — and it’s designed specifically for the Yeastrix product line.

The 3-Phases of the Protocol

  • 1 – Initiation Phase
    Begin with low doses to gently assess your tolerance.
  • 2 – Treatment Phase
    Increase to full therapeutic doses for powerful Candida-cleansing results.
  • 3 – Maintenance Phase
    Step down to a long-term supportive dose to help prevent recurrence and maintain gut harmony

Yeastrix Supplement Protocol Guidelines

Download your free copy of the Yeastrix Dietary Supplement Protocol. It is a condensed version of the information in this page. Download this PDF here.


It briefly explains how to take Yeastrix — the best Candida cleanse supplements — by outlining the three key stages and guiding you through the protocol step-by-step, so you don’t have to guess.

Best Candida Cleanse Supplements: The Yeastrix Trio

To get the most from your Candida Cleanse protocol, we recommend using all three Yeastrix products:

Yeastrix Candida Cleanse

Potent antifungal and antibacterial herbal support.

Yeastrix Daily Probiotic

Replenishes beneficial bacteria, reinforces immune function.

Yeastrix Active Enzymes

Supports digestion, nutrient absorption, and gut repair.

Phase 1: The Initiation

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Starting Out – The Induction Phase (Weeks 1 – 2)

This first phase is especially important if you’re just starting out, have never taken antifungal supplements before, or tend to be more sensitive.

Starting with a lower dosage gives your body the time it needs to gradually adjust to the antifungal effects and digestive support of the Yeastrix protocol.

By easing in, you reduce the risk of uncomfortable symptoms — and many people even start feeling noticeably better during this early phase, as gut balance begins to shift and digestive function starts to improve.

This stage works best when combined with the diet, lifestyle, and hydration recommendations from your Candida Cleanse Program.

You’re laying the foundation for a healthy and vibrant gut — and we want that foundation strong.

Why Start Low?

Clinical experience shows that starting with a lower dosage:

  • Reduces die-off and symptom aggravation
  • Increases compliance and confidence
  • Supports the body’s natural cleansing and detoxification pace
  • Allows time for gut and immune systems to stabilise

Addressing the foundations of health — like rest, stress, water intake, exercise, and bowel function — makes this phase even more effective.

Phase 1 Dosage Guidelines

Begin with low doses of each Yeastrix product for 1 to 2 weeks. This will allows your body to adapt before moving on to full therapeutic dosage levels.

Yeastrix Candida Cleanse

1–2 capsules daily with meals or snacks.
Sensitive? Start with 1 capsule per day with your largest meal, and slowly work up to 2 or 3 capsules over 1–2 weeks.

Yeastrix Daily Probiotic

1 capsule twice daily with meals.
Note: Probiotics help restore gut flora, and work in synergy with antifungals for better long-term results.

Yeastrix Active Enzymes

1 capsule twice daily with meals.
Tip: This supports digestion and reduces bloating or discomfort as your gut adjusts to the cleanse.

Good Candidates for the Initiation Phase

Helpful Tips For Phase 1

  • Drink plenty of filtered water — hydration supports toxin removal.
  • Focus on rest, relaxation, and good nutrition.
  • Monitor your symptoms — minor changes are normal, but discomfort should not be overwhelming.
  • Customise the dosage if needed — 1 capsule of each per day is fine if you’re very sensitive.

Once you feel stable at these lower doses (usually after 1-2 weeks) — you’ll be ready to move into the next stage: Phase 2 – Treatment.

Phase 2: The Treatment

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Full Support – The Core of the Supplement Program (Weeks 3 – 8)

This is gut restoration – it’s the most crucial phase of the Candida Cleanse – the meat in the sandwich. Phase 2 is where real transformation begins — the gut starts clearing unwanted yeast, bacteria, and biofilm build-up.

It’s the intensive middle stretch of your journey, and the focus here is on consistent, therapeutic support. This phase uses higher dosages in short bursts, followed by lower doses.

Why? Because this method works — better than the classic “1 capsule three times a day” approach. We’ve found this treatment method allows the immune system to have the upper hand and helps the gut break through chronic or resistant symptoms.

If you’ve plateaued, or had recurring flare-ups, this is the phase that can push you over that plateau— provided you stay consistent.

Why Cycle Antimicrobial Dosages?


Clinical experience consistently shows that many patients respond better when dosages are cycled — that is, short periods of higher doses followed by a return to lower or moderate levels. In fact, there’s no need to rotate between different antifungal supplements; you simply need the right formula from the start.

Here’s why a treatment phase is important:

  • Clears deep-seated overgrowth of Candida, SIBO, and gut dysbiosis
  • Breaks down protective biofilms using enzymes and antimicrobial activity
  • Supports immune function and microbiome rebalancing
  • Works best when combined with dietary changes, especially antimicrobial, high-polyphenol, and small amounts of fermented foods.

Addressing the foundations of health — like rest, stress, water intake, and bowel function — can make this phase so much more more effective. We’ve always found clinically when patients eat better, are more active, and work on their stress levels they tend to recover faster than those who don’t.

Phase 2 – Treatment Dosage Guidelines

This is the full-treatment phase—time to turn up the heat. Start strong, stay consistent, and adjust based on how your body responds. Listen closely, monitor symptoms, and fine-tune your dosage as needed.

Tracking Your Symptoms

TIP: Use the Symptom Tracker (PDF) to monitor changes. This is especially beneficial if you are undertaking the Candida Cleanse Program. You can also download the editable Candida Cleanse Symptom Tracker (.xlsx file) [Here].

Yeastrix Candida Cleanse

The dosage suggestions below are some of the most effective, but your ideal dose will depend on your individual needs. The best way to find it? Careful experimentation. In my clinic, I often found that people with chronic or recurring issues made real progress by cycling their doses.

Start with 1 capsule three times daily for two weeks. Then step it up to 2 or even 3 capsules three times daily with food. After three days at the higher dose, check in with how you’re feeling. Don’t be afraid to push things a bit harder at times, it’s usually how we break through barriers that have held us back.If old symptoms resurface, don’t panic! – See it rather a sign that deeper healing is underway, and that you need to back off the pedal a little.

If you feel noticeably better once they pass, you’re likely on the right track. The right way to figure out if you are “getting better or worse” is to track your symptoms over time.

Treatment Dosage Suggestions

  • Take 1–3 capsules, 2 or 3 times daily with meals (standard treatment dose)
  • High-dose cycle: 6–9 capsules daily for 1–2 weeks
  • Medium-Dose Cycle: 3–6 capsules daily for 1–2 weeks
  • Low-Dose Cycle: 1-3 capsules daily for 1–2 weeks
  • Optional cycles: Alternate high/low every 7 – 14 days (for up to 4–6 months) for chronic issues
  • Adjust to 2 capsules daily if you’re sensitive or beginning to stabilise

Antifungals Help:

  • Target and reduce Candida overgrowth directly, helping break down fungal cell walls and biofilms.
  • Address bacterial imbalances often found alongside Candida colonies, including opportunistic pathogens.
  • Support a more thorough microbial reset by clearing out harmful microbes that disrupt gut ecology.
  • Reduce symptoms driven by microbial and mycotoxins, like headaches, fatigue, or skin flare-ups.
  • Enhance the effectiveness of probiotics and digestive enzymes by lowering microbial competition.

Yeastrix Daily Probiotic

1 capsule twice daily with meals is generally satisfactory. Some will find advantage in reducing probiotics in the Candida Cleanse (the antifungal) high-dose cycle, and increasing probiotics (3 per-day) in the Candida Cleanse low-dose cycle. Probiotics work in synergy with antifungals for better long-term results, they work even better if we eat the right food to support their actions.

Treatment Dosage Suggestions

  • Take 1 capsule twice daily with meals, or
  • 3 capsules daily (all with meals) for strong support
  • Experiment with taking 1 or 2 capsules at night before bed (well-away from foods). For some it works well.

Probiotics Help:

  • Restore and maintain a healthy balance of gut bacteria disrupted by Candida overgrowth.
  • Support immune function by crowding out harmful microbes and reinforcing the gut barrier.
  • Aid in reducing Candida-related symptoms like fatigue, brain fog, and bowel irregularities.
  • Enhance recolonisation of beneficial bacteria during and after cleansing, helping to prevent relapse.

Yeastrix Active Enzymes

Enzymes support digestion and reduces bloating or discomfort as your gut adjusts to the cleanse. Like probiotics, they help shape your digestive function and gut microbiome, enzymes can offer significant digestive and systemic benefits during the maintenance phase.

Treatment Dosage Suggestions

  • Take 1 capsule three daily with meals.
  • 3 or more capsules daily (all with meals) for extra-strong gut support

Enzymes Help:

  • Reduce the time it takes to feel better
  • Improve nutrient availability during the treatment and cleansing phase.
  • Lower the burden of digestive symptoms, (like bloating, gas, digestive or bowel problems) making your journey more comfortable.
  • Assist in the clearance of harmful levels of micro-organisms and their biofilm protective layers.

Good Candidates for the Treatment Phase

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Customise Your Dosages Based on Your History

If you’ve had a long-term pattern of Candida relapses, yeast infections, or persistent SIBO, (or any functional gut issue) you may benefit from staying on the high-low cycle for up to 4 to 6 months. Each case is different, and only through experimentation will you be able to find the perfect dose.

Once your symptoms improve and your energy levels return, shift gradually to a maintenance phase. Many people report feeling better within weeks, but optimal gut restoration takes time, but dropping-out at this stage can mean a return to old symptoms.

It’s important to remember you’re rebuilding you gut — not just wiping out Candida or SIBO overgrowth, but laying the groundwork for long-term digestive and gut microbiome health. Too many times we’ve seen patients in the past who quit prematurely, only to experience a recurrence of old symptoms, especially if “old habits” creep back in.

Helpful Tips for Phase 2

Key Goals of Phase 2

  • Clear fungal and bacterial overgrowth.
  • Break biofilms that protect Candida and SIBO.
  • Reduce gut inflammation and immune dysregulation.
  • Rebuild gut microbiome strength – reduce intestinal permeability (leaky gut).
  • Prepare for maintenance and long-term gut microbiome health.

Once your symptoms have reduced and you feel better (after trying cycling higher doses, after 3-8 weeks) — you’ll be ready to move into the next stage: Phase 3 – Maintenance.

Phase 3: The Maintenance

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Long-Term Balance & Microbiome Support (Months 2 – 6+)

We’re into gut building now. You’ve done the hard yards — now it’s time to consolidate your gains and keep your gut in top shape. This final phase helps prevent relapse of Candida, SIBO, or other gut-related symptoms, and supports the long-term rebuilding of a strong, diverse microbiome.

The mistake many people make? Stopping too soon. Just because the symptoms have gone doesn’t mean the job is done. When you’re using the best Candida cleanse supplements, you don’t need much to keep your gut in top shape.

This phase is about stability, not complacency.

If you’ve been feeling good for 2–4 months, it’s often the perfect time to transition to a maintenance dosage. The goal here is to sustain gut health, not to keep pushing aggressively. Think of this phase more like “holding the fort.”

Why Does Maintenance Matter?

  • It follows through and clears deep-seated overgrowth of Candida, SIBO, and gut dysbiosis
  • Continues to break down protective biofilms using enzymes, antimicrobial activity, and increased gut immune function.
  • Supports immune function and gut microbiome re-balancing
  • Works best when combined with the Foundation Diet and followed up with Gut Building.

Just like the other two phases, addressing the foundations of health — like rest, stress, water intake, and bowel function — makes this phase more effective.

Good Candidates for the Maintenance Phase

  • You’ve completed the Candida Cleanse Beginner and Advanced Programs and most or all your symptoms have significantly improved or resolved.
  • You’re looking to prevent relapse and maintain long-term gut and immune health.
  • You’ve successfully resolved chronic or recurring vaginal yeast infection or men’s yeast infection and want to prevent recurrence.
  • Occasional mild symptoms still occur, but no longer interfere with daily life.
  • You’re focused on rebuilding the gut microbiome and maintaining dietary balance.
  • You’ve successfully introduced more foods without triggering strong reactions.

Phase 3 – Maintenance Dosage Guidelines

This is the maintenance phase—time to turn down the heat. After the more intensive treatment stage, your focus now shifts to stability, resilience, and prevention. Maintenance dosages are gentler and more sustainable, allowing your gut microbiome to rebuild and settle into long-term balance. This is where true recovery takes root.

Yeastrix Candida Cleanse

Your ideal maintenance dose depends on your diet & lifestyle, stress levels, and relapse history. While many people do well on lower doses, others may require a bit more support. In my clinic, I found that those prone to flare-ups or living under constant stress often benefited from staying on a steady daily dose for several months – and slowly wind-down. You don’t need to push hard here—just stay consistent and let your body do the rest. In such cases – stress management and sleep improvement are critical.

Maintenance Dosage Suggestions

  • 1–2 capsules daily with meals or snacks
  • Continue for 6–12 months depending on your needs
  • Some individuals do well long-term with 2, 3, or even 4 capsules daily, especially under high stress
  • Reduce to 1 capsule daily for ongoing support during periods of travel, poor sleep, chronic stress, or known relapse triggers

Yeastrix Daily Probiotic

Probiotics play a critical role in keeping Candida overgrowth and SIBO under control and supporting a resilient, balanced gut microbiome. In the maintenance phase, they help lock in the progress you’ve made by promoting microbial diversity, improving immune regulation, and crowding out an imbalance of opportunistic organisms like Candida albicans.

A typical maintenance dose is 1 capsule twice daily with meals, which suits most people well. However, some find it helpful to adjust their probiotic intake depending on where they are in their cycle. For example, you may choose to scale back probiotics slightly during a higher-dose phase of antifungals, and then increase to 3 capsules per day during lower-dose or maintenance periods to give your beneficial flora a stronger edge.

Probiotics work best when paired with the right diet—plenty of fibre, fermented foods, and prebiotic-rich plants. Taken consistently, they act like daily insurance for your gut, helping to maintain balance, improve digestion, and reduce the chances of a Candida overgrowth rebound.

Maintenance Dosage Suggestions

  • 1–2 capsules daily with meals
  • Maintain with probiotic-rich foods and anti-inflammatory diet
  • Long-term probiotic use is safe and clinically supported for digestive balance and immune resilience
  • Experiment with taking 1 or 2 capsules at night before bed (well-away from foods). For some it works well.

Yeastrix Active Enzymes

Even after the main treatment phase, many people continue to experience occasional bloating, fullness, or sluggish digestion—especially when reintroducing more foods. That’s where Active Enzymes earn their keep. During the maintenance phase, they help smooth out digestion, enhance nutrient absorption, and reduce post-meal discomfort while your gut microbiome stabilises.

A typical maintenance dose is 1 capsule two to three times daily with meals. These enzymes assist your body in breaking down proteins, fats, and carbohydrates more efficiently, lightening the digestive load and supporting a healthy gut environment where Candida struggles to thrive.

People with a history of food intolerances, gas, or irregular bowel function often find that staying on enzymes long-term helps their gut transition more comfortably—especially if their diet starts to expand. Combined with probiotics and a microbiome-supportive diet, Active Enzymes offer a gentle but consistent layer of support during this rebuilding phase.

Experiencing a Return of Old Symptoms?

f symptoms begin to creep back in during maintenance, don’t ignore them. They’re signals. You may need to temporarily increase your dosage or revisit dietary and lifestyle habits. And remember: supporting your gut through challenging times (like travel, sleep loss, or emotional stress) isn’t any sign of weakness—it’s wise, proactive care.

Maintenance Dosage Suggestions

  • 1 capsule with each meal (3x daily) during early maintenance. Reduce to 1 per day as you improve significantly.
  • Adjust to 1 capsule daily, especially with heavier meals (high-fat or high-protein).
  • Enzyme needs vary — reduce or continue based on digestion, bloating, or energy after meals.

Transition Tips & Troubleshooting

  • If you experience a flare-up, fatigue, or symptom return, simply go back to Phase 2 for 2–4 weeks.
  • If you’re struggling to stay well on maintenance, look deeper: diet, hydration, sleep, stress, bowel regularity — there’s usually a reason.
  • Some people naturally cycle between restoration and maintenance throughout the year — that’s OK.
  • It’s always about individualised care, not a rigid plan.

Who Might Stay Longer on Maintenance Dosage?

Some people simply live and work in ways that put more pressure on their digestive and immune systems. Night shift workers, truck drivers, pilots, and frequent travellers often experience irregular sleep, disrupted circadian rhythms, poor food choices on the go, and chronic stress—all of which can create the perfect storm for Candida or other gut imbalances to return.

The same goes for anyone with a history of recurring issues like SIBO, IBS, or IBD. Their systems may need a longer runway to stabilise and recover fully.

For these people, staying on a maintenance dose—typically 2 to 3 capsules daily of a broad-spectrum formula like Candida Cleanse—makes sense. It’s not a sign of failure or dependence. In fact, it’s smart, preventive care.

Supporting the body during vulnerable times helps prevent setbacks, supports microbiome balance, and keeps the progress you’ve made from slipping away. It’s like not wearing your seatbelt on the highway —why risk it when you don’t have to?

Here are a few different examples of individuals who may need extra-support:

  • Shift Workers and Night Owls
  • Nurses, factory workers, hospitality staff, and others working irregular hours often face disrupted sleep and hormone imbalances that can weaken immune and digestive function.
  • Long-Haul Drivers and Pilots
  • People spending long hours sitting, eating on the road, and operating under high stress or poor sleep are more prone to gut imbalances and Candida relapses.
  • Frequent Travellers
  • Whether for work or leisure, regular travel exposes you to inconsistent meals, unfamiliar microbes, poor food choices, time zone changes, and higher stress—all gut-disrupting factors.
  • Chronically Stressed or Sleep-Deprived Individuals
  • High cortisol, shallow sleep, skipped meals, and digestive suppression can set the stage for gut dysfunction and immune fatigue.
  • People with a History of Relapse
  • If you’ve struggled with repeated flare-ups of Candida, SIBO, IBS, or IBD, your gut may need longer-term microbial support to maintain balance.
  • Busy Parents, Caregivers, and Over-Committers
  • Constant multitasking, emotional stress, and lack of self-care can silently wear down gut resilience over time.
  • Those Recovering from Antibiotics or Gut Infections
  • If you’ve recently had antibiotics, food poisoning, or a GI infection, staying on a maintenance protocol can help rebuild your microbiome properly.

These people may benefit from staying on 2–3 capsules of Candida Cleanse (or more) for several months. This certainly isn’t a failure — it’s just smart, proactive gut support.

Additional Lifestyle Considerations

  • Hydration: Drink plenty of water to support natural detox and elimination
  • Diet: Stick with the Foundation Diet or the final phase of your Candida Cleanse Diet
  • Routine Monitoring: Check in with symptoms and adjust as needed
  • Periodic Cleanse Rounds: A short repeat treatment phase 1–2x per year is perfectly fine

Maintenance = Prevention

This phase ensures the results you’ve worked so hard to achieve don’t slowly unwind. Small, daily support goes a long way to keeping Candida, SIBO, and dysbiosis from sneaking back in.

Whether you’re down to 1 capsule a day or holding at 3, what matters most is consistency. The gut responds to routine — not perfection, but persistence.

Key Takeaways – Phase 3

  • Lower dosages help maintain progress and prevent relapse long term.
  • Tailor your intake based on stress, symptoms, and lifestyle
  • Long-term support is safe, gentle, and often necessary
  • Always reassess if symptoms creep back in — don’t wait for a full relapse
  • Aleays combine supplements with diet, hydration, rest, and lifestyle
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Eric Bakker N.D.

Greetings! I am a naturopathic physician from New Zealand. Although I’ve retired from clinical practice since 2019, I remain passionate about helping people improve their lives. You’ll find I’m active online with a focus on natural health and wellbeing education through my Facebook page and YouTube channel, including this website.

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2 Comments

  1. I had a severe issue approximately 10 years ago with extreme itching on either side of upper bridge of nose. So severe, it scratched it raw & caused a Staff infection on my face. Dermatologists could not help me. A very experienced practitioner insisted on a stool sample test & found extreme overgrowth of candida glabrata & gave me a liquid tincture of his private line, Thai Botanical, which along with eliminating sugars completely cleared it up. It is moderately serious again & I see I need to fully eliminate sugar altogether. I do not have a sensitive digestive system when it comes to supplements. Does your product address candida glabrata & could I begin with a therapeutic dose? Thank you for any assistance. Maryann

    Reply

    1. Hi Maryann,

      Thank you so much for reaching out to me and for sharing your story. I can tell you’ve been through a lot with your skin and Candida issues, and it takes sheer determination to keep pushing for answers after not getting the right help early on. I’ve seen many patients with skin issues related to fungal and bacterial overgrowth, especially psoriasis, but also staph infections, mainly nasal staph infections, but also .

      You did very well to connect the dots with Candida and sugar – those two are often tightly linked. I always found glabrata and krusei to be two species of Candida that can be difficult to fully eradicate unless you dig you heels in with treatment.

      To your question: yes, my new product range Yeastrix was specifically designed to help address the five core Candida species we most often see clinically – and Candida glabrata is one of them. The Yeastrix Candida Cleanse formula combines carefully selected ingredients that target Candida overgrowth, support gut balance, and make it harder for yeast to persist.

      Since you’ve mentioned that you don’t usually have a sensitive digestive system with supplements, you could certainly begin with a therapeutic dose. Many people start with the higher end of the dosage range if they tolerate it well, though I usually recommend working up gradually over a week or so to be sure your body is comfortable with it. Some people experience what’s called “die-off” when Candida is targeted, so pacing yourself can make the process smoother.

      Alongside Yeastrix, you’ve already identified one of the most important pillars: reducing or eliminating sugars. That change alone takes away a major fuel source from Candida. Combining diet, lifestyle adjustments, and targeted support like Yeastrix gives you the best chance of long-term improvement. I recommend the Yeastrix Gut Restore Pack, it contains the Cleanse formula, the Probiotics, and the Enzymes. Just follow the dosage recommendations, and stick with Module 2 of the program as far as diet is concerned it’s on this link: https://candida.com/the-cleanse-diet/
      I’ve finished writing a two-book series on Candida cleansing, the Ultimate Candida Cleanse Guide and Ultimate Candida Cleanse Program Book. It’s written for those wishing to fully recover, and it’s almost ready to go online as a series of two PDF e-books that can be printed-off.
      It would be perfect for you to follow!

      Wishing you the very best on your healing journey,
      Eric Bakker, ND
      Naturopath | Candida & Gut Health Specialist

      Reply

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